Contested Claims
Evidence pair

small vs WBbt:0004017

PhenotypeAnimals are shorter and thinner than control animals at the same developmental stage.·Anatomy

Evidence summary

138 claims between these entities

123Supports
2Refutes
13Uncertain

Refuting evidence (2)

refutesnegatively regulates52% conf.

The arginine-dependent production of nitric oxide (NO), which is strongly inhibited by methylarginines, serves as a protective small molecule against oxidative stress in eukaryotic cells.

Methylarginine efflux in nutrient-deprived yeast mitigates disruption of nitric oxide synthesis.PMID:36454288(2023)
refutespositively regulates52% conf.

Anti-alpha4 antibody but not anti-beta7 antibody treatment also induced a small but significant decrease in the numbers of mast cells in tongue tissue.

Blockade of either alpha-4 or beta-7 integrins selectively inhibits intestinal mast cell hyperplasia and worm expulsion in response to Nippostrongylus brasiliensis infection.PMID:11241291(2001)

Supporting evidence (123)

supportspositively regulates52% conf.

Interestingly, the DB(1) and DB(3) to a small extent stimulate the proliferation of HeLa and F-977 cells, respectively.

[Dimeric bisberzimidazoles: cytotoxicity and effects on DNA methylation in normal and cancer human cells].PMID:23808164(2013)
supportspositively regulates52% conf.

This biosensor was successfully applied to screen a library of small chemical compounds leading to discovery of a family of quinacridine analogs, which potently inhibit cancer cell proliferation, and promote accumulation of cells in S phase and G2.

Targeting Conformational Activation of CDK2 Kinase.PMID:28430399(2017)
supportsnegatively regulates52% conf.

Here in this study, we report that emetine inhibits migration and invasion of human non-small-cell lung cancer (NSCLC) cells.

Emetine inhibits migration and invasion of human non-small-cell lung cancer cells via regulation of ERK and p38 signaling pathways.PMID:26332055(2015)
supportsexpressed in52% conf.

In the current study, EGFR, IL-6, and glycoprotein 130 (GP130) were highly expressed in non-small cell lung cancer (NSCLC) tissue samples and were associated with clinicopathological features and poor prognosis of patients with NSCLC.

Interaction between epidermal growth factor receptor and interleukin-6 receptor in NSCLC progression.PMID:30132982(2019)
supportsregulates52% conf.

Here, we have shown that a nano-formulated bioactive small molecule inhibitor Quinacrine (NQC) caused apoptosis in oral cancer stem cells (OCSCs; isolated from different oral cancer cells and oral cancer patient derived primary cells) by down regulating WNT-β catenin and HH-GLI components through activation of GSK3β.

Nanoquinacrine caused apoptosis in oral cancer stem cells by disrupting the interaction between GLI1 and β catenin through activation of GSK3β.PMID:28720477(2017)
supportspositively regulates52% conf.

The small molecules, natural antioxidant Caffeic Acid (trans-3,4-Dihydroxycinnamic acid CA) and anti-diabetic drug Metformin (Met), activate 5′-adenosine monophosphate-activated protein kinase (AMPK) and interfere with metabolic reprogramming in human cervical squamous carcinoma cells.

Caffeic Acid Targets AMPK Signaling and Regulates Tricarboxylic Acid Cycle Anaplerosis while Metformin Downregulates HIF-1α-Induced Glycolytic Enzymes in Human Cervical Squamous Cell Carcinoma Lines.PMID:29958416(2018)
supportspositively regulates52% conf.

Moreover, knockdown of CD10 expression by CD10 small interfering RNA in HCC cells suppressed cell migratory/invasive abilities and overexpression of CD10 relieved the migration inhibition induced by niclosamide.

Niclosamide, an oral antihelmintic drug, exhibits antimetastatic activity in hepatocellular carcinoma cells through downregulating twist-mediated CD10 expression.PMID:29480568(2018)
supportsphysically interacts52% conf.

Using structure-guided design, we discovered small molecules that increase nucleotide exchange on RAS in vitro at submicromolar concentrations, bind to SOS1 with low double-digit nanomolar affinity, rapidly enhance cellular RAS-GTP levels, and invoke biphasic signaling changes in phosphorylation of ERK 1/2.

Discovery and Structure-Based Optimization of Benzimidazole-Derived Activators of SOS1-Mediated Nucleotide Exchange on RAS.PMID:30205005(2018)
supportspositively regulates52% conf.

Silencing of SHP-1 gene by small interfering RNA (siRNA) reversed the ABZ-promoted attenuation of STAT3 as well as STAT5 activation and cellular apoptosis.

Albendazole Exhibits Anti-Neoplastic Actions against Gastric Cancer Cells by Affecting STAT3 and STAT5 Activation by Pleiotropic Mechanism(s).PMID:33807326(2021)
supportsnegatively regulates52% conf.

Currently, a broad array of small-molecule drugs is known that specifically inhibit protein synthesis in eukaryotic cells.

A Quick Guide to Small-Molecule Inhibitors of Eukaryotic Protein Synthesis.PMID:33280581(2020)
supportscauses52% conf.

A series of mutations of the TTT have been identified that cause disease syndrome with neurodevelopmental defects, and misregulation of the TTT has been shown to contribute to myeloma, colorectal, and non-small-cell lung cancers.

TTT (Tel2-Tti1-Tti2) Complex, the Co-Chaperone of PIKKs and a Potential Target for Cancer Chemotherapy.PMID:37175973(2023)
supportsnegatively regulates52% conf.

Furthermore, we evaluated the therapeutic potential of plumbagin in non-small cell lung cancer (NSCLC), and found that Kelch-like ECH-associated protein 1 (KEAP1)-mutant NSCLC cells, which possess constitutive nuclear factor erythroid 2-related factor 2 (NRF2) activity, were insensitive to plumbagin; however, inhibition of glucose transporter 1 (GLUT1) by small-molecule BAY-876 or inhibiting glucose-6-phosphate dehydrogenase (G6PD) by 6-aminonicotinamide (6-AN) overcame the plumbagin-resistance of KEAP1-mutant NSCLC cells.

Plumbagin reduction by thioredoxin reductase 1 possesses synergy effects with GLUT1 inhibitor on KEAP1-mutant NSCLC cells.PMID:34954641(2022)
supportsnegatively regulates52% conf.

NPD689 suppressed the transcriptional activity of TEAD and reduced the viability of human malignant pleural mesothelioma and non-small cell lung cancer cells but not the viability of normal human mesothelial cells.

Identification of a derivative of the alkaloid emetine as an inhibitor of the YAP-TEAD interaction and its potential as an anticancer agent.PMID:36809780(2023)
supportscauses52% conf.

Non-small cell lung cancer (NSCLC) is a leading cause of cancer-related deaths worldwide.

Plumbagin Triggers STING Pathway Activation to Suppress Non-Small Cell Lung Cancer Progression.PMID:41065101(2025)
supportspositively regulates52% conf.

In non-small cell lung cancer (NSCLC), M2-polarized tumor-associated macrophages (TAMs) induce T cell dysfunction and correlate with poor clinical outcomes.

Artesunate modulates the tumor microenvironment via STAT1/IRF1-mediated TAM repolarization and T cell activation in non-small cell lung cancer.PMID:40737844(2025)
supportspositively regulates52% conf.

Transmittance increases induced by hypo-osmotic artificial cerebrospinal fluid or 10 microM kainate were small in the CA1 cell body region compared to dendritic regions.

Imaging cell volume changes and neuronal excitation in the hippocampal slice.PMID:7830884(1994)
supportspositively regulates52% conf.

At the lower concentrations tested, suramin stimulated proliferation of the two small cell lung cancer cell lines, NCI-H187 and NCI-N417.

Effects of suramin on human lung cancer cell lines.PMID:7718332(1995)
supportsnegatively regulates52% conf.

Suramin inhibits the growth of non-small cell lung cancer (NSCLC) and breast cancer in vitro by blocking the action of most known growth factors.

Suramin in non-small cell lung cancer and advanced breast cancer. Two parallel phase II studies.PMID:9140434(1997)
supportspositively regulates52% conf.

In the present investigation we evaluated the ability of suramin to induce cross-linked envelope (CLE) formation, as a common marker for squamous differentiation and apoptosis, in three representative human non-small cell lung cancer cell lines: NCI-H226 (squamous), NCI-H358 (bronchoalveolar [adenocarcinoma]), and NCI-H596 (adenosquamous).

Effect of suramin on squamous differentiation and apoptosis in three human non-small-cell lung cancer cell lines.PMID:8806101(1996)
supportsregulates52% conf.

Use of a small-molecule, cell-permeable dimerizer to control the interaction of a transcription activation domain and a DNA-binding domain allows the level of expression of a target gene to be regulated by the concentration of dimerizer.

Controlling gene expression using synthetic ligands.PMID:9608512(1998)
supportsnegatively regulates52% conf.

We found that at 5 h in vitro only a small number of cells took up Co(2+) upon stimulation with 100 microM kainate or other AMPA receptor agonists, in the presence of cyclothiazide (CTZ), to inhibit desensitisation.

Development of chick retina cells in culture: cobalt entry through AMPA receptors and expression of GluR4 AMPA receptor subunit.PMID:12524178(2003)
supportsregulates52% conf.

Here it is shown that small molecule aptamers also bound their ligand in vivo, enabling development of a method for controlling gene expression in living cells.

Controlling gene expression in living cells through small molecule-RNA interactions.PMID:9765156(1998)
supportscauses52% conf.

The RNA interference (RNAi) phenomenon is a recently observed process in which the introduction of a double-stranded, small interfering RNA (siRNA) into a cell causes the specific degradation of a homologous single-stranded RNA.

Small interfering RNA-mediated inhibition of hepatitis G virus gene expression in human hepatoma cell Huh-7.PMID:15844358(2005)
supportsprevents52% conf.

Small interfering RNAs lowered NRF2 expression in HepG2 cells and prevented the up-regulation of BSEP by oltipraz.

Nuclear factor erythroid 2-related factor 2 is a positive regulator of human bile salt export pump expression.PMID:19821532(2009)
supportsregulates52% conf.

Results revealed a unique profile of small numbers of equivalently up- and down-regulated genes with biological functions that included transport and localization, ubiquitin metabolism, apoptosis and cell cycle control.

Microarray profile of seizure damage-refractory hippocampal CA3 in a mouse model of epileptic preconditioning.PMID:17935890(2007)
supportspositively regulates52% conf.

Depletion of 14-3-3 zeta levels using small interfering RNA induced both ER stress proteins and death of granule cells.

Depletion of 14-3-3 zeta elicits endoplasmic reticulum stress and cell death, and increases vulnerability to kainate-induced injury in mouse hippocampal cultures.PMID:18466333(2008)
supportsregulates52% conf.

MicroRNAs (miRNAs) are a highly conserved group of small non-coding RNAs (18-25 nucleotides), instrumental in modulating the expression of target genes associated with various biological and cellular processes including cellular senescence.

The roles of MTOR and miRNAs in endothelial cell senescence.PMID:32246301(2020)
supportsnegatively regulates52% conf.

Concurrently, small molecules that suppress senescent phenotypes without causing cell death are known as senomorphics.

Senotherapeutics to Counteract Senescent Cells Are Prominent Topics in the Context of Anti-Ageing Strategies.PMID:38339070(2024)
supportspositively regulates52% conf.

This article focuses on the prospects of small-molecule-induced cell reprogramming for anti-aging, covering its mechanisms, applications, current limitations, and future directions to facilitate clinical translation and breakthroughs in human healthspan extension.

Molecular time machines unleashed: small-molecule-driven reprogramming to reverse the senescence.PMID:41528804(2026)
supportsregulates52% conf.

Increasingly, the role of genomic non-protein coding small regulatory RNAs, in particular the microRNAs (miRNAs), in regulating cellular pathways controlling fundamental functions in the nervous system and in neurodegenerative disease is being appreciated.

Short non-coding RNA biology and neurodegenerative disorders: novel disease targets and therapeutics.PMID:19297399(2009)
supportscauses52% conf.

Angiostrongylus cantonensis causes eosinophilic meningitis and eosinophilic pleocytosis in humans and is of significant socio-economic importance globally. microRNAs (miRNAs) are endogenous small non-coding RNAs that play crucial roles in gene expression regulation, cellular function and defense, homeostasis and pathogenesis.

Angiostrongylus cantonensis: identification and characterization of microRNAs in male and female adults.PMID:21356210(2011)
supportsnegatively regulates52% conf.

However, PPNs have evolved specialized effector proteins (small, secreted molecules, typically proteins, that enter host cells to directly suppress immunity and manipulate host processes), which they secrete into host tissues and cells to interfere with ROS production and signaling.

Unseen Struggles: How Plant-Parasitic Nematodes Manipulate ROS Signaling in Host Plants.PMID:41650946(2026)
supportspositively regulates52% conf.

Recently, we identified a small heat shock protein expressed by Brugia malayi (BmHsp12.6) that can bind to soluble human IL-10 receptor alpha (IL-10R) and activate IL-10 mediated effects in cell lines.

Biochemical characterization and evaluation of a Brugia malayi small heat shock protein as a vaccine against lymphatic filariasis.PMID:22496777(2012)
supportspositively regulates52% conf.

Smaller increases were observed with repeated injections of mitogen-stimulated spleen lymphocyte supernatants, with L-cell supernatants, and with fibroblast growth factor.

In vivo increase of cutaneous mast cells in response to specific mediators and ascaris antigen.PMID:3570496(1987)
supportsregulates52% conf.

Small interfering RNA-mediated knockdown of the cytoplasmic HSP90 alpha isoform 2 (Smp_072330) also attenuated stem cell proliferation and restricted schistosomulum growth, supporting the importance of this isoform. 17-AAG and EC-144 attenuated the phosphorylation of schistosomula Akt/protein kinase B, extracellular signal-regulated kinase and p38 mitogen-activated protein kinase, suggesting HSP90 regulates core 'system-based' signalling pathways in the parasite; glucose uptake was also reduced.

Heat shock protein 90 as a vital signalling hub in Schistosoma mansoni: a master regulator of stem cell proliferation, development and survival.PMID:41667069(2026)
supportspositively regulates52% conf.

The present investigation was undertaken to determine whether reserpine-induced increase in the sulphation of the small intestinal goblet cell mucins of rats affects the establishment of intestinal helminths.

Reserpine-induced sulphomucin production by goblet cells in the jejunum of rats and its significance in the establishment of intestinal helminths.PMID:8817604(1995)
supportsregulates52% conf.

In snails maintained at LC25, showed significantly higher percentages of small round cells than controls, 56.2% & 9.2% respectively.

Effect of the plant Cupressus macro-carpa (Cupressacea) on some haematolo-gical and biochemical parameters of Biomphalaria alexandrina snails.PMID:17153702(2006)
supportspositively regulates52% conf.

Here we show that both excretory-secretory products (E-S) and extract of T. spiralis can stimulate the release of the cytokine interleukin 25 (IL-25) from the mouse small intestinal villi and evoke calcium responses from tuft cells in the intestinal organoids, which can be blocked by a bitter-taste receptor inhibitor, allyl isothiocyanate.

Infection by the parasitic helminth Trichinella spiralis activates a Tas2r-mediated signaling pathway in intestinal tuft cells.PMID:30819885(2019)
supportspositively regulates52% conf.

Inhibition of the NLRP3 inflammasome by small interfering RNA (siRNA) blocked extracellular secretory proteins (ESPs) stimulated COX-2, mPGES-1 and PGE-2 in microglia.

Activation of the COX-2/mPGES-1/PGE-2 cascade through the NLRP3 inflammasome contributes to Angiostrongylus cantonensis-induced eosinophilic meningoencephalitis.PMID:39832004(2025)
supportsregulates52% conf.

These small RNAs form complex networks that regulate cell differentiation, development and homeostasis.

Regulation of microRNA function in animals.PMID:30108335(2019)
supportsrequired for52% conf.

The relatively small concentrations required for in vivo bioactivity of diterpene ester skin irritants and promoters (approximately 10 nmol per animal; approximately 10 nM in cell cultures) has discouraged studies of EPR spectra of bioactive, TPA-analogous, spin-labeled phorbol-12,13-diesters [(n,m)PA] bound to their membrane receptors, protein kinases C (PKC).

Spin-labeled phorbol esters and their interactions with cellular membranes--V. Electron paramagnetic resonance of spin-labeled phorbol-12,13-diesters bound to their receptors in mouse brain particulate fraction.PMID:1310906(1992)
supportsinteracts with52% conf.

Helminths secrete small regulatory microRNA (miRNAs), which can interact with host cells.

A secreted helminth microRNA suppresses gastrointestinal cell differentiation required for innate immunity.PMID:40213548(2025)
supportsregulates52% conf.

These findings therefore identify a novel small-molecule-activated GATA factor that is required to regulate the cell type-specific effects of DIF.

Cell type specificity of a diffusible inducer is determined by a GATA family transcription factor.PMID:18367552(2008)
supportsregulates52% conf.

CLEs are small non-cell autonomous signalling peptides that regulate cell division rate and orientation in a variety of developmental contexts.

Evolution of CLE peptide signalling.PMID:32444290(2021)
supportsregulates52% conf.

These small RNAs guide animal development by regulating temporal transitions in gene expression involved in cell fate choices and transitions between pluripotency and differentiation.

Evolution of the let-7 microRNA family.PMID:22617875(2012)
supportsregulates52% conf.

MicroRNAs (miRNAs) are small (20-24 nucleotides), non-coding ribonucleid acids, which regulate gene expression on the post-transcriptional level, thus influencing physiological processes including cellular growth, differentiation and apoptosis.

[MicroRNA profiles in fine needle biopsy of the thyroid].PMID:22692277(2012)
supportspositively regulates52% conf.

Overall, our results indicated that T. spiralis induced autophagy of host small intestinal cells, and its TsSPIs play an important role in enhancing autophagy flux by affecting autophagy-related pathways.

Effects of Trichinella spiralis and its serine protease inhibitors on autophagy of host small intestinal cells.PMID:37874164(2023)
supportspositively regulates52% conf.

The origin and fate of small "oval" cells expressing different immunohistologic phenotypes and ultrastructural appearance were examined in livers of Syrian hamsters during cholangiocarcinogenesis induced by dimethylnitrosamine and promoted by Clonorchis sinensis infection.

Heterogeneity of the "oval-cell" response in the hamster liver during cholangiocarcinogenesis following Clonorchis sinensis infection and dimethylnitrosamine treatment.PMID:9210619(1997)
supportspositively regulates52% conf.

It appears that C. sinensis infection stimulates proliferation and differentiation of small ductular or periductal cells (primitive oval cells) into either hepatocyte-like oval cells, which mature into hepatocytes without malignant transformation, or into ductular-like oval cells.

Heterogeneity of the "oval-cell" response in the hamster liver during cholangiocarcinogenesis following Clonorchis sinensis infection and dimethylnitrosamine treatment.PMID:9210619(1997)
supportspositively regulates52% conf.

Small activating RNAs (saRNAs) involved in RNAa have been successfully used to activate gene expression in cultured cells, and thereby this emergent technique might allow us to develop various biotechnological applications, without the need to synthesize hazardous construct systems harboring exogenous DNA sequences.

Small Activating RNAs: Towards the Development of New Therapeutic Agents and Clinical Treatments.PMID:33800164(2021)
supportsregulates52% conf.

GJ proteins form plasma membrane channels that facilitate passage of small molecules across cells and modulate signaling pathways and cellular behavior in different tissues.

Gap junction proteins: master regulators of the planarian stem cell response to tissue maintenance and injury.PMID:22450236(2013)
supportsregulates52% conf.

Endogenous small non-coding RNAs play important roles in many biological processes such as protection against foreign pathogens, cell differentiation, and chromosomal stability by regulating target gene expression at the transcriptional and post-transcriptional levels.

In silico analysis of endogenous siRNAs associated transposable elements and NATs in Schistosoma japonicum reveals their putative roles during reproductive development.PMID:29568977(2018)
supportspositively regulates52% conf.

Whereas neurotransmitters can stimulate ILCs, the synthesis of small-molecule neurotransmitters by these cells has only recently been appreciated.

Acetylcholine production by group 2 innate lymphoid cells promotes mucosal immunity to helminths.PMID:33674321(2021)
supportsregulates52% conf.

Herein, we show that Ago1 and Ago4, which encode key components of the small RNA-induced silencing complex (RISC), were up-regulated in murine macrophage RAW264.7 cells transfected by Echinococcus multilocularis miR-71 (emu-miR-71) mimics.

Effects of Echinococcus multilocularis miR-71 mimics on murine macrophage RAW264.7 cells.PMID:26995025(2016)
supportsregulates52% conf.

CLE peptides are small extracellular proteins important in regulating plant meristematic activity through the CLE-receptor kinase-WOX signalling module.

Enhanced resistance to soybean cyst nematode Heterodera glycines in transgenic soybean by silencing putative CLE receptors.PMID:25581705(2015)
supportsnegatively regulates52% conf.

In the in vitro assay, rNAPc2 obviously inhibited the invasive ability of non-small cell lung cancer (NSCLC) cells in a dose-dependent manner.

Recombinant nematode anticoagulant protein c2 inhibits cell invasion by decreasing uPA expression in NSCLC cells.PMID:25672417(2015)
supportsregulates52% conf.

PIWI-interacting RNAs (piRNAs) are genome-encoded small RNAs that regulate germ cell development and maintain germline integrity in many animals.

The RNA polymerase II subunit RPB-9 recruits the integrator complex to terminate Caenorhabditis elegans piRNA transcription.PMID:33533030(2021)
supportsregulates52% conf.

Similar to classic hormonal signalling, small RNAs also play a critical role in regulating development and behaviour in a cell non-autonomous fashion.

Developmental plasticity and the response to nutrient stress in Caenorhabditis elegans.PMID:33549550(2021)
supportsrequired for52% conf.

I will then define the core molecular mechanisms - the Par/Crb/Scrib polarity complexes, small GTPases, the actin and microtubule cytoskeletons, and phosphoinositides/PI3K signaling - that are required for asymmetric cell division, apico-basal and front-rear polarity in model systems, including C elegans zygote, Drosophila embryos and cultured mammalian cells.

Molecular mechanisms of cell polarity in a range of model systems and in migrating neurons.PMID:32485296(2020)
supportspositively regulates52% conf.

Recently, stimulated Raman scattering (SRS) microscopy has emerged as a powerful tool to visualize small biological molecules tagged with alkyne (C≡C) or carbon-deuterium (C-D) bonds in the cell-silent region.

Quantitative Imaging of Lipid Synthesis and Lipolysis Dynamics in Caenorhabditis elegans by Stimulated Raman Scattering Microscopy.PMID:30589537(2019)
supportspositively regulates52% conf.

MANF is a small, soluble, endoplasmic-reticulum (ER)-resident protein that is secreted upon ER stress and promotes survival of target cells such as neurons.

MANF deletion abrogates early larval Caenorhabditis elegans stress response to tunicamycin and Pseudomonas aeruginosa.PMID:31138438(2019)
supportsinteracts with52% conf.

These approaches can be employed to screen drugs and small molecules that can interact with the biogenesis and dynamics of formation of tau aggregates and to analyze their interactions with other cellular proteins.

Caenorhabditis elegans Models to Investigate the Mechanisms Underlying Tau Toxicity in Tauopathies.PMID:33187241(2020)
supportsregulates52% conf.

Post-translational modification by small ubiquitin-related modifier (SUMO) is a key regulator of cell physiology, modulating protein-protein and protein-DNA interactions.

Comprehensive list of SUMO targets in Caenorhabditis elegans and its implication for evolutionary conservation of SUMO signaling.PMID:29348603(2018)
supportsregulates52% conf.

Here we report that a small protein, SrpA, controls core cellular processes in response to phage infection and environmental signals in Pseudomonas aeruginosa.

Regulatory protein SrpA controls phage infection and core cellular processes in Pseudomonas aeruginosa.PMID:29748556(2018)
supportsregulates52% conf.

The small GTPase Rab11 dynamically changes its location to regulate various cellular processes such as endocytic recycling, secretion, and cytokinesis.

REI-1 Is a Guanine Nucleotide Exchange Factor Regulating RAB-11 Localization and Function in C. elegans Embryos.PMID:26506309(2015)
supportsregulates52% conf.

RhoGEF proteins activate the Rho family of small GTPases and thus play a key role in regulating fundamental cellular processes such as cell morphology and polarity, cell cycle progression and gene transcription.

RHGF-2 is an essential Rho-1 specific RhoGEF that binds to the multi-PDZ domain scaffold protein MPZ-1 in Caenorhabditis elegans.PMID:22363657(2012)
supportspositively regulates52% conf.

Although non-small cell lung carcinoma with an activating EGFR mutation, L858R, responds well to gefinitib and erlotinib, tumors with a doubly mutated EGFR, T790M-L858R, acquire resistance to these drugs.

An in vivo C. elegans model system for screening EGFR-inhibiting anti-cancer drugs.PMID:22957020(2012)
supportspositively regulates52% conf.

Chemical genomics combines chemistry with molecular biology as a means of exploring the function of unknown proteins or identifying the proteins responsible for a particular phenotype induced by a small cell-permeable bioactive molecule.

Chemical genomics and emerging DNA technologies in the identification of drug mechanisms and drug targets.PMID:22690680(2012)
supportsregulates52% conf.

The mechanisms regulating the extension of small unicellular tubes remain poorly defined.

A pathway for unicellular tube extension depending on the lymphatic vessel determinant Prox1 and on osmoregulation.PMID:23334499(2013)
supportspositively regulates52% conf.

Rab GTPase-activating protein, RabGAP, acts as a negative regulator of Rab small GTPases, which orchestrate the intracellular membrane trafficking involved in cell proliferation.

A RabGAP regulates life-cycle duration via trimeric G-protein cascades in Dictyostelium discoideum.PMID:24349132(2013)
supportspositively regulates52% conf.

The complexity increases with the dynamic delay induced by other small molecules involved in gene regulation, and noisy cellular environment.

DDGni: dynamic delay gene-network inference from high-temporal data using gapped local alignment.PMID:24285602(2014)
supportspositively regulates52% conf.

Using a functional siRNA (small interfering RNA) screen in HeLa cells, we identified Roquin-2 (also called RC3H2) as an E3 ubiquitin ligase required for ROS-induced ubiquitination and degradation of ASK1.

Roquin-2 promotes ubiquitin-mediated degradation of ASK1 to regulate stress responses.PMID:24448648(2014)
supportsexpressed in52% conf.

RNA sequencing of mRNAs and small RNAs in the 1-cell hybrid embryo revealed that about one hundred sixty paternal mRNAs are reproducibly expressed in the embryo and that about half of all assayed endogenous siRNAs and piRNAs are also of paternal origin.

Paternal RNA contributions in the Caenorhabditis elegans zygote.PMID:24894551(2014)
supportsregulates52% conf.

Small RNAs recognize, bind, and regulate other complementary cellular RNAs.

Nuclear RNAi contributes to the silencing of off-target genes and repetitive sequences in Caenorhabditis elegans.PMID:24532782(2014)
supportspositively regulates52% conf.

Subsequent studies from our lab also revealed that PAX5 transcription factor is preferentially expressed in small cell lung cancer (SCLC) and promotes MET transcription.

Role of PAX8 in the regulation of MET and RON receptor tyrosine kinases in non-small cell lung cancer.PMID:24628993(2014)
supportspositively regulates52% conf.

We propose that TOE-2 ensures an apoptotic fate for the small Q.a daughter by promoting asymmetry in the daughter cell sizes of the Q.a neuroblast division but by a mechanism that is independent of cell size in the Q.p division.

The DEP domain-containing protein TOE-2 promotes apoptosis in the Q lineage of C. elegans through two distinct mechanisms.PMID:24961802(2014)
supportsregulates52% conf.

Signaling pathways and small RNAs direct diverse cellular events, but few examples are known of defined signaling pathways directly regulating small RNA biogenesis.

A requirement for ERK-dependent Dicer phosphorylation in coordinating oocyte-to-embryo transition in C. elegans.PMID:25490268(2014)
supportsprevents52% conf.

Management of ROS to prevent potential damage, yet enabling its signalling function is achieved through numerous enzyme systems e.g. peroxidases, superoxide dismutases etc. and small molecules e.g. glutathione that collectively form the cellular anti-oxidant system.

Should I stay or should I go: beta-catenin decides under stress.PMID:19268509(2009)
supportsregulates52% conf.

Small guanosine triphosphatases of the Rab family regulate intracellular vesicular trafficking.

UNC-108/RAB-2 and its effector RIC-19 are involved in dense core vesicle maturation in Caenorhabditis elegans.PMID:19797081(2009)
supportspositively regulates52% conf.

MicroRNA are small noncoding transcripts involved in many cellular mechanisms, including tumorigenesis. miR-210, in particular, is induced by hypoxia and correlates with adverse outcomes in certain cancers.

Circulating miR-210 as a Novel Hypoxia Marker in Pancreatic Cancer.PMID:20360935(2010)
supportscauses52% conf.

We next adapted this technology to conduct a small molecule screen and identified compounds that altered the intracellular accumulation of the human aggregation prone mutant that causes liver disease in α1-antitrypsin deficiency.

Automated high-content live animal drug screening using C. elegans expressing the aggregation prone serpin α1-antitrypsin Z.PMID:21103396(2010)
supportsregulates52% conf.

Originally discovered in C. elegans, microRNAs (miRNAs) are small RNAs that regulate fundamental cellular processes in diverse organisms.

Analysis of microRNA expression and function.PMID:22118279(2011)
supportsregulates52% conf.

Further elucidation of how miRNAs and other small RNAs interact with known and yet-to-be identified gene regulatory pathways in the cell should provide us with a more in-depth understanding of the mechanisms regulating cellular function and differentiation, and facilitate the application of small RNA technology in disease control and treatment.

MicroRNAs and cell differentiation in mammalian development.PMID:16847891(2006)
supportsnegatively regulates52% conf.

MicroRNAs (miRNAs) are small, abundant transcripts that can bind partially homologous target messages to inhibit their translation in animal cells. miRNAs have been shown to affect a broad spectrum of biological activities, including developmental fate determination, cell signaling and oncogenesis.

Modulated microRNA expression during adult lifespan in Caenorhabditis elegans.PMID:16842496(2006)
supportsregulates52% conf.

P21 activated kinases (PAKs) are major downstream effectors of rac-related small GTPases that regulate various cellular processes.

The Caenorhabditis elegans P21-activated kinases are differentially required for UNC-6/netrin-mediated commissural motor axon guidance.PMID:17050621(2006)
supportsregulates52% conf.

The small G protein Cdc42 also functions in cell polarity and has been shown in some cases to act by regulating the Par3 complex.

Similar requirements for CDC-42 and the PAR-3/PAR-6/PKC-3 complex in diverse cell types.PMID:17383625(2007)
supportspositively regulates52% conf.

Our goal was to identify and characterize new XSEs and further analyze known XSEs to understand the principles by which a small difference in the concentration of an intracellular signal is amplified to induce dramatically different developmental fates.

A ONECUT homeodomain protein communicates X chromosome dose to specify Caenorhabditis elegans sexual fate by repressing a sex switch gene.PMID:17720939(2007)
supportsregulates52% conf.

Thus, specific Argonaute proteins can transport specific classes of small regulatory RNAs to distinct cellular compartments to regulate gene expression.

An Argonaute transports siRNAs from the cytoplasm to the nucleus.PMID:18653886(2008)
supportsphysically interacts52% conf.

In a parallel fashion, we detect hScrt expression in lung cancers with NE features, especially small cell lung cancer. hScrt shares the capacity of other Snail family members to bind to E-box enhancer motifs, which are targets of basic helix--loop--helix (bHLH) transcription factors.

Mammalian Scratch: a neural-specific Snail family transcriptional repressor.PMID:11274425(2001)
supportsregulates52% conf.

Small interfering RNAs regulate gene expression in diverse biological processes, including heterochromatin formation and DNA elimination, developmental regulation, and cell differentiation.

Small RNAs with 5'-polyphosphate termini associate with a Piwi-related protein and regulate gene expression in the single-celled eukaryote Entamoeba histolytica.PMID:19043551(2008)
supportsrequired for52% conf.

Small regulatory RNAs have crucial roles in the timing mechanism, and the cellular machinery required for production of these RNAs intersects with that used to process double-stranded RNAs during RNA interference.

Control of developmental timing in animals.PMID:11533718(2001)
supportspositively regulates52% conf.

We also found that CrkL-induced activation of small guanine triphosphatase (GTPase) Rac1 was significantly inhibited by the DOCK2-dCS mutant in 293T cells.

DOCK2 associates with CrkL and regulates Rac1 in human leukemia cell lines.PMID:12393632(2002)
supportsregulates52% conf.

Family B (the secretin-receptor family or 'family 2') of the GPCRs is a small but structurally and functionally diverse group of proteins that includes receptors for polypeptide hormones, molecules thought to mediate intercellular interactions at the plasma membrane and a group of Drosophila proteins that regulate stress responses and longevity.

Family-B G-protein-coupled receptors.PMID:11790261(2001)
supportsregulates52% conf.

The family of Rac small GTPases including Rac1, Rac2 and Rac3 regulate numerous cellular processes.

Interaction of the small GTPase Rac3 with NRBP, a protein with a kinase-homology domain.PMID:11956649(2002)
supportspositively regulates52% conf.

Both microRNAs (miRNA) and small interfering RNAs (siRNA) share a common set of cellular proteins (Dicer and the RNA-induced silencing complex [RISC]) to elicit RNA interference.

Functional siRNAs and miRNAs exhibit strand bias.PMID:14567918(2003)
supportsregulates52% conf.

Small RNA technology is both extremely versatile, because virtually any expressed gene can be inhibited, and effective, because it exploits natural cellular machinery that evolved to use small RNAs to regulate gene expression.

Silencing unhealthy alleles naturally.PMID:12727375(2003)
supportspositively regulates52% conf.

First discovered in plants the nematode Caenorhabditis elegans, the production of small interfering RNAs (siRNAs) that bind to and induce the degradation of specific endogenous mRNAs is now recognized as a mechanism that is widely employed by eukaryotic cells to inhibit protein production at a post-transcriptional level.

RNA interference in biology and medicine.PMID:14657420(2003)
supportsregulates52% conf.

The mechanisms that regulate the small GTPase Ras as well as the downstream kinases MEK and extracellular signal regulated kinase (ERK) are well understood.

Mechanisms of regulating the Raf kinase family.PMID:12639709(2003)
supportsnegatively regulates52% conf.

In vivo HsEg5 is reversibly inhibited by monastrol, a small cell-permeable molecule that causes cells to be arrested in mitosis.

Interaction of the mitotic inhibitor monastrol with human kinesin Eg5.PMID:12525161(2003)
supportspositively regulates52% conf.

Calmodulin (CaM), a small calcium-binding protein, is the key mediator of numerous calcium-induced changes in cellular activity.

Functional analysis of the single calmodulin gene in the nematode Caenorhabditis elegans by RNA interference and 4-D microscopy.PMID:14703012(2003)
supportsregulates52% conf.

We found that two small coexpressed groups of genes regulated by the Mcm1-Fkh2-Ndd1 transcription regulatory complex are sufficient to account for the difference in the effects of HP and MD on the progress of the cell cycle, namely, G1 arrest with MD and an S phase delay followed by a G2/M arrest with HP.

Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress.PMID:15371544(2004)
supportsregulates52% conf.

Thioredoxins are a class of small proteins that play a key role in regulating many cellular redox processes.

Lifespan decrease in a Caenorhabditis elegans mutant lacking TRX-1, a thioredoxin expressed in ASJ sensory neurons.PMID:16387300(2006)
supportsregulates52% conf.

The small GTP-binding protein family regulates various cell functions in mammalian and yeast cells.

Molecular cloning of a Rho family, CDC42Ca gene from Candida albicans and its mRNA expression changes during morphogenesis.PMID:9229333(1997)
supportsregulates52% conf.

First, studies with the small nematode Caenorhabditis elegans have identified a number of apoptosis regulating genes--the first evidence that cell death is an active process under genetic control.

Advances in apoptosis research.PMID:9398063(1997)
supportspositively regulates52% conf.

Small changes of extracellular pH activate depolarizing inward currents in most nociceptive neurons.

Molecular cloning and regional distribution of a human proton receptor subunit with biphasic functional properties.PMID:9886053(1999)
supportspositively regulates52% conf.

From a high-content screen, we identified loperamide as a small molecule that can prevent FoxO inhibitor-induced glucagon expression and further stimulate insulin protein processing and secretion by altering calcium levels, intracellular pH, and FoxO1 localization.

An inhibitor-mediated beta-cell dedifferentiation model reveals distinct roles for FoxO1 in glucagon repression and insulin maturation.PMID:34454092(2021)
supportsrequired for52% conf.

Many proteins required for the biogenesis and function of silencing small RNAs (sRNAs) enrich in nuage, and it is often assumed that nuage is the cellular site where sRNAs are synthesized and encounter target transcripts for silencing.

Nuage condensates: accelerators or circuit breakers for sRNA silencing pathways?PMID:34772788(2022)
supportsnegatively regulates52% conf.

The natural small molecules can inhibit protein aggregation and underlying cellular pathogenesis of neurodegenerative diseases involving multi-factorial mechanisms of action.

A natural small molecule-mediated inhibition of alpha-synuclein aggregation leads to neuroprotection in Caenorhabditis elegans.PMID:37429595(2024)
supportsnegatively regulates52% conf.

Small-molecule drugs were designed to target and stabilize G4 structures, thereby blocking replication and transcription, resulting in cancer cell death.

A synthetic lethal approach to drug targeting of G-quadruplexes based on CX-5461.PMID:37339720(2023)
supportspositively regulates52% conf.

Here, we present a series of small-molecule compounds based on bis(phenylmethylen)cycloalkanones and their heterocyclic analogues, identified via targeted library screening, that can induce NRF1-dependent downstream events, such as proteasome synthesis, heat shock response, and autophagy, in both model cell lines and Caenorhabditis elegans strains.

Small-molecule activators of NRF1 transcriptional activity prevent protein aggregation.PMID:39884031(2025)
supportsregulates52% conf.

Dicer proteins also produce microRNAs (miRNAs), a class of endogenous small non-coding RNAs that regulate essential cellular functions through post-transcriptional mechanisms.

Shared and unique mechanisms of RNAi-mediated antiviral immunity in C. elegans.PMID:40022946(2025)
supportsnegatively regulates51% conf.

We discovered pyrvinium, a small-molecule inhibitor of GIC self-renewal in vitro and in vivo, in part through inhibition of Wnt/β-catenin signaling and other essential stem cell regulatory pathways.

Pyrvinium Targets CD133 in Human Glioblastoma Brain Tumor-Initiating Cells.PMID:26152745(2015)
supportssuppresses51% conf.

Targeting these structures by small compounds shows promise in the selective suppression of cell growth, opening up novel possibilities for anticancer treatment.

Benzimidazole-based small molecules as anticancer agents targeting telomeric G-quadruplex and inhibiting telomerase enzyme.PMID:39316718(2024)
supportssuppresses51% conf.

These results indicate that DEX-treatment delayed the rejection of E. trivolvis from the small intestine of SCID mice in association with the suppression of goblet cell hyperplasia.

The expulsion of Echinostoma trivolvis caused by goblet cell hyperplasia in severe combined immunodeficient (SCID) mice.PMID:9772720(1998)
supportssuppresses51% conf.

These results indicate that dexamethasone treatment delayed the expulsion of E. trivolvis from the small intestine of the host mouse in association with the suppression of goblet cell hyperplasia and increase in the number of mast cells and eosinophils.

The expulsion of Echinostoma trivolvis: suppressive effects of dexamethasone on goblet cell hyperplasia and worm rejection in C3H/HeN mice.PMID:9008738(1996)
supportspositively regulates51% conf.

In the small intestine, chemosensing by epithelial tuft cells results in the activation of group 2 innate lymphoid cells (ILC2s), which subsequently drive increased tuft cell frequency.

Tuft-Cell-Derived Leukotrienes Drive Rapid Anti-helminth Immunity in the Small Intestine but Are Dispensable for Anti-protist Immunity.PMID:32160525(2020)
supportsregulates51% conf.

MicroRNAs (miRNAs) are a class of small (∼22 nucleotides), non-coding, highly conserved single-stranded RNAs with posttranscriptional regulatory features, including the regulation of cell proliferation, differentiation, survival, and apoptosis.

Different micro-RNA expression profiles distinguish subtypes of neuroendocrine tumors of the lung: results of a profiling study.PMID:24875640(2014)
supportsregulates51% conf.

Small-molecule ligands of nuclear hormone receptors (NHRs) govern the transcriptional regulation of metazoan development, cell differentiation, and metabolism.

Comparative metabolomics reveals endogenous ligands of DAF-12, a nuclear hormone receptor, regulating C. elegans development and lifespan.PMID:24411940(2014)
supportssuppresses51% conf.

The small ubiquitin-like modifier (SUMO), initially characterized as a suppressor of a mutation in the gene encoding the centromeric protein MIF2, is involved in many aspects of cell cycle regulation.

Dynamic SUMO modification regulates mitotic chromosome assembly and cell cycle progression in Caenorhabditis elegans.PMID:25475837(2014)
supportsregulates51% conf.

The small nematode Caenorhabditis elegans is an excellent model system to study the regulation of cell division in a multicellular organism, and is poised to make important contributions to this field.

Cyclin-dependent kinases in C. elegans.PMID:16759361(2006)
supportsregulates51% conf.

The small Ras-like GTPase Rap1 has been identified as a regulator of integrin activation and cadherin-mediated cell-cell contacts.

RAP-1 and the RAL-1/exocyst pathway coordinate hypodermal cell organization in Caenorhabditis elegans.PMID:17989692(2007)
supportspositively regulates51% conf.

Foremost is our current inability to restrict the activity of small regulatory RNA to this RNA cleavage pathway which leads to the activation of other cellular regulations some of which have a lower level of sequence specificity than RNA interference.

[RNA interference in mammalian cells].PMID:18533094(2007)
supportsnegatively regulates51% conf.

RNA duplexes of 21 - 23 nucleotides (nts), with approximately 2 nt 3' overhangs (called small interfering RNAs or siRNAs), have recently been shown to mediate sequence-specific inhibition of gene expression in mammalian cells via a post-transcriptional gene silencing (PTGS) mechanism termed RNA interference (RNAi).

RNAi as a gene therapy approach.PMID:12831363(2003)

Uncertain evidence (13)

uncertainnegatively regulates52% conf.

The major objective of this work was to explore the possibility of identifying a small molecule inhibitor of the dengue virus protease and assessing its ability to suppress viral replication in cultured cells.

A small molecule inhibitor of dengue virus type 2 protease inhibits the replication of all four dengue virus serotypes in cell culture.PMID:25886260(2015)
uncertaininteracts with52% conf.

Because monomeric TCTP (mTCTP) and dTCTP share a high topological similarity, we hypothesized that small molecules interacting with mTCTP would also bind to dTCTP and interfere with dTCTP-based cellular processes.

Meclizine, a piperazine-derivative antihistamine, binds to dimerized translationally controlled tumor protein and attenuates allergic reactions in a mouse model.PMID:36493627(2023)
uncertainrequired for52% conf.

This might be because the small number of chromosomes in the genome predisposes aneuploid cells to an imbalance of genes carrying out the basic activities required for cell division and cell survival.

Aneuploidy in male Indian muntjac cells is limited to the Y2 chromosome.PMID:9491391(1998)
uncertainprevents52% conf.

Therefore, identifying small molecular compounds that could prevent the age-related decline of stem cell function is a primary goal in anti-aging research.

Antioxidant Effects of Caffeic Acid Lead to Protection of Drosophila Intestinal Stem Cell Aging.PMID:34568344(2021)
uncertainnegatively regulates52% conf.

Trichinella spiralis excretory/secretory proteins may inhibit apoptosis of NCI-H446 small-cell lung cancer cells by reducing the apoptosis protein C-myc and Bcl-2 mRNA levels, and causing the increase of Fas/Fasl mRNA ratio.

[Effect of the excretory/scretory proteins from Trichinella spiralis on apoptosis of NCI-H446 small-cell lung cancer cells].PMID:25518596(2014)
uncertaincauses52% conf.

Focal application of small doses of the putative inhibitory neurotransmitter gamma-aminobutyric acid (GABA) onto the somata of pyramidal cells caused a conductance increase and hyperpolarization.

Cellular physiology of the turtle visual cortex: synaptic properties and intrinsic circuitry.PMID:2868076(1986)
uncertainexpressed in52% conf.

After early surface ectodermal expression, the anterior and central class genes are expressed in small domains of putative neural precursor cells co-expressing ClSoxB1, suggesting an evolutionary early function of Hox genes in patterning parts of the nervous system.

Coordinated spatial and temporal expression of Hox genes during embryogenesis in the acoel Convolutriloba longifissura.PMID:19796382(2009)
uncertainrequired for52% conf.

The smaller genome size of wBm, relative to wMel, may reflect the loss of genes required for infecting host cells and avoiding host defense systems.

The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode.PMID:15780005(2005)
uncertainpositively regulates52% conf.

Our data suggest that Z granules coordinate small RNA-based gene regulation to promote germ cell function and that ZSP-1 helps/is need to maintain Z granule morphology and liquidity.

ZSP-1 is a Z granule surface protein required for Z granule fluidity and germline immortality in Caenorhabditis elegans.PMID:33438773(2021)
uncertainregulates52% conf.

These defects correlate with the altered abundance and distribution of a number of chromatin modifications, all of which can be corrected by disabling components of the endogenous small RNA pathway, suggesting that AMPK regulates germ cell integrity by targeting an RNA interference (RNAi)-like pathway during dauer.

AMPK regulates germline stem cell quiescence and integrity through an endogenous small RNA pathway.PMID:31166944(2019)
uncertainnegatively regulates52% conf.

We show that ZYG11A/B subunit knockdown, or broad cullin-RING ubiquitin ligase inactivation with the small molecule MLN4924, inhibits mitotic slippage in human cells, suggesting the potential for antimitotic combination therapy.

The ubiquitin ligase CRL2ZYG11 targets cyclin B1 for degradation in a conserved pathway that facilitates mitotic slippage.PMID:27810909(2016)
uncertainpositively regulates51% conf.

This small amount of newly generated CD8α+ DCs might contribute to enhanced activation of CD8+T cells via cross-presentation and activation which then attenuate hepatic pathological damage found in Batf3 -/- mice.

Absence of Batf3 results in reduced liver pathology in mice infected with Schistosoma japonicum.PMID:28646891(2017)
uncertainnegatively regulates51% conf.

Taken together, our data suggest that isoharringtonine is a potential natural product for treatment of non-small cell lung cancers, and inhibition of NR4A1 sensitizes cancer cells to anti-cancer treatment.

Isoharringtonine Induces Apoptosis of Non-Small Cell Lung Cancer Cells in Tumorspheroids via the Intrinsic Pathway.PMID:33172112(2020)