Evidence Engine
Gene

lin-39

WBGene00003024protein_coding_geneCaenorhabditis elegans

abnormal cell LINeage 39

Synonyms: C07H6.7, CELE_C07H6.7, ceh-15

lin-39 at a glance

Evidence and relationships from published C. elegans research

100Relationships
193Claims

Knowledge Graph Relationships

Outgoing (50)

lin-39regulationlin-39Gene
16 claims16 supportssupported
lin-39expressed inWBbt:0004017Anatomy
14 claims14 supportssupported
lin-39regulationmab-5Gene
7 claims7 supportssupported
lin-39regulateslin-39Gene
7 claims5 supports2 uncertainsupported
lin-39expressed inWBbt:0006748Anatomy
5 claims5 supportssupported
lin-39regulationceh-20Gene
3 claims3 supportssupported
lin-39regulationWBGene00002990Protein
3 claims3 supportssupported
lin-39regulationegl-5Gene
3 claims3 supportssupported
lin-39positively regulatesmab-5Gene
3 claims3 supportssupported
lin-39expressed inWBbt:0005027Anatomy
3 claims3 supportssupported
lin-39causes phenotypelongPhenotype
3 claims3 supportssupported
lin-39regulatesWBbt:0006748Anatomy
2 claims2 supportssupported
lin-39regulatesWBbt:0004017Anatomy
2 claims2 supportssupported
lin-39causes phenotypemolt defectPhenotype
2 claims2 supportssupported
lin-39causes phenotypevulvalessPhenotype
2 claims2 supportssupported

Incoming (50)

lin-39regulationlin-39Gene
16 claims16 supports
lin-39regulateslin-39Gene
7 claims5 supports
ceh-13regulationlin-39Gene
6 claims6 supports
ceh-20regulationlin-39Gene
3 claims3 supports
WBGene00003024regulationlin-39Protein
3 claims3 supports
WBbt:0006748expressed inlin-39Anatomy
3 claims3 supports
pry-1regulationlin-39Gene
2 claims2 supports
WBGene00002637regulationlin-39Protein
2 claims2 supports
unc-62regulationlin-39Gene
2 claims2 supports
egl-18regulationlin-39Gene
2 claims2 supports

Evidence (193 claims)

Supportscauses_phenotype
lin-39→vulvaless

Mutations in lin-39 in Caenorhabditis elegans and Pristionchus pacificus result in a vulvaless phenotype because presumptive vulva precursor cells adopt non-vulval fates.

The pax-3 gene is involved in vulva formation in Pristionchus pacificus and is a target of the Hox gene lin-39.PMID:17652349
Supportsregulation100% conf.
lin-39→LIN-1

The Hox gene lin-39 functions downstream of both, the LIN-3/RTK/Ras pathway and LIN-1 and plays a pivotal role in controlling vulva cell competence and induction.

The Mi-2 nucleosome-remodeling protein LET-418 is targeted via LIN-1/ETS to the promoter of lin-39/Hox during vulval development in C. elegans.PMID:17466968
Supportsexpressed_in
lin-39→cell

Mutations in lin-39 in Caenorhabditis elegans and Pristionchus pacificus result in a vulvaless phenotype because presumptive vulva precursor cells adopt non-vulval fates.

The pax-3 gene is involved in vulva formation in Pristionchus pacificus and is a target of the Hox gene lin-39.PMID:17652349
Supportsregulation100% conf.
REF-2→ref-2

REF-2 functions with the Hox proteins to prevent Pn.p cell fusion. ref-2 may also be a transcriptional target of the Hox proteins.

The zinc finger protein REF-2 functions with the Hox genes to inhibit cell fusion in the ventral epidermis of C. elegans.PMID:12091304
Supportsregulation100% conf.
lin-39→GATA

C. elegans lin-39 (Cel-lin-39) indirectly controls the cell fusion gene eff-1 by regulating the GATA transcription factors egl-18 and elt-6.

The pax-3 gene is involved in vulva formation in Pristionchus pacificus and is a target of the Hox gene lin-39.PMID:17652349
Supportsregulation100% conf.
lin-39→lin-39

During vulval induction, the Ras pathway, together with basal lin-39 activity, up-regulates lin-39 expression in vulval precursor cells.

The Hox gene lin-39 is required during C. elegans vulval induction to select the outcome of Ras signaling.PMID:9486792
Supportsregulation100% conf.
lin-39→egl-5

In lin-39 mutants, mid-body cells express fates characteristic of more anterior or posterior homologs, and the migration of a neuroblast through the mid-body is defective. lin-39 acts cell autonomously in these mid-body cells and in the migrating neuroblast. lin-39 encodes a protein with an Antennapedia class homeodomain, most similar to those of the Drosophila homeotic genes Deformed and Sex combs reduced, and is located in a homeotic gene cluster with two other regional homeotic genes, mab-5 and egl-5. lin-39 and mab-5 function combinatorially in 2 ectodermal cells and have redundant functions in gonad development.

Control of cell fates in the central body region of C. elegans by the homeobox gene lin-39.PMID:8101475
Supportsregulation100% conf.
ref-1→MAB-5

Here we identify a gene, ref-1, that regulates the hermaphrodite Pn.p cell fusion pattern largely by regulating MAB-5 activity in these cells.

REF-1, a protein with two bHLH domains, alters the pattern of cell fusion in C. elegans by regulating Hox protein activity.PMID:11311160
Supportsregulation100% conf.
lin-39→lin-39

C. elegans lin-39 mutants are vulvaless and the vulval precursor cells fuse with the surrounding hypodermis, whereas in P. pacificus lin-39 mutants the vulval precursor cells die by apoptosis.

The Pristionchus HOX gene Ppa-lin-39 inhibits programmed cell death to specify the vulva equivalence group and is not required during vulval induction.PMID:9729494
Supportscauses_phenotype
lin-39→vulvaless

C. elegans lin-39 mutants are vulvaless and the vulval precursor cells fuse with the surrounding hypodermis, whereas in P. pacificus lin-39 mutants the vulval precursor cells die by apoptosis.

The Pristionchus HOX gene Ppa-lin-39 inhibits programmed cell death to specify the vulva equivalence group and is not required during vulval induction.PMID:9729494
Supportsregulation100% conf.
mab-5→ceh-20

Notably, mab-5 and ceh-20 are required not only during early development but also in later life stages to maintain posterior MN identity.

PBX-dependent and independent Hox programs establish and maintain motor neuron terminal Identity.PMID:41497632
Supportscauses_phenotype
sem-4→abnormal

By characterizing three new alleles of sem-4 that we identified in a screen for vulval-defective mutants, we determined that loss of sem-4 activity results in abnormal specification of the secondary vulval cell lineages.

sem-4 promotes vulval cell-fate determination in Caenorhabditis elegans through regulation of lin-39 Hox.PMID:10926783
Supportscauses_phenotype
mab-5→long

The Caenorhabditis elegans lin-39, mab-5 and egl-5 Hox genes specify cell fates along the anterior-posterior body axis of the nematode during postembryonic development, but little is known about Hox gene functions during embryogenesis.

Anterior organization of the Caenorhabditis elegans embryo by the labial-like Hox gene ceh-13.PMID:10068646
Supportsexpressed_in
ceh-13→cell

Here, we show that the C. elegans labial-like gene ceh-13 is expressed in cells of many different tissues and lineages and that the rostral boundary of its expression domain is anterior to those of the other Hox genes.

Anterior organization of the Caenorhabditis elegans embryo by the labial-like Hox gene ceh-13.PMID:10068646
Supportsexpressed_in
lin-39→cell

In lin-39 mutants, mid-body cells express fates characteristic of more anterior or posterior homologs, and the migration of a neuroblast through the mid-body is defective. lin-39 acts cell autonomously in these mid-body cells and in the migrating neuroblast. lin-39 encodes a protein with an Antennapedia class homeodomain, most similar to those of the Drosophila homeotic genes Deformed and Sex combs reduced, and is located in a homeotic gene cluster with two other regional homeotic genes, mab-5 and egl-5. lin-39 and mab-5 function combinatorially in 2 ectodermal cells and have redundant functions in gonad development.

Control of cell fates in the central body region of C. elegans by the homeobox gene lin-39.PMID:8101475
Supportscauses_phenotype
lin-39→long

Down-regulation of the central hox gene lin-39 in dividing vulval cells results in their premature cell cycle exit, whereas constitutive lin-39 expression causes precocious Pn.p cell and sex myoblast divisions and prolongs the proliferative phase of the vulval cells past their normal point of arrest.

Prolonging somatic cell proliferation through constitutive hox gene expression in C. elegans.PMID:37891160
Supportsexpressed_in
lin-39→cell

Down-regulation of the central hox gene lin-39 in dividing vulval cells results in their premature cell cycle exit, whereas constitutive lin-39 expression causes precocious Pn.p cell and sex myoblast divisions and prolongs the proliferative phase of the vulval cells past their normal point of arrest.

Prolonging somatic cell proliferation through constitutive hox gene expression in C. elegans.PMID:37891160
Supportsregulation100% conf.
lin-39(ccc16)→lin-39

Using these reporters of neuronal subtype, we also find that the lin-39(ccc16) mutation disrupts neuronal fates specifically in the region where lin-39 and mab-5 are coexpressed, and that the protein encoded by lin-39(ccc16) is active only in the absence of mab-5.

Hox proteins interact to pattern neuronal subtypes in Caenorhabditis elegans males.PMID:35137058
Supportsregulation100% conf.
sem-4→sem-4

We analyzed sem-4 interactions with other genes involved in vulval differentiation and determined that sem-4 does not function directly in the Ras-mediated signal transduction pathway but acts in close association with and upstream of lin-39 to promote vulval cell fate.

sem-4 promotes vulval cell-fate determination in Caenorhabditis elegans through regulation of lin-39 Hox.PMID:10926783
Supportsregulation100% conf.
LET-418→lin-39

Here we show that LET-418, a C. elegans ortholog of the human NuRD component Mi-2, negatively modulates the activity of lin-39.

The Mi-2 nucleosome-remodeling protein LET-418 is targeted via LIN-1/ETS to the promoter of lin-39/Hox during vulval development in C. elegans.PMID:17466968

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