Evidence Engine
Gene

lin-3

WBGene00002992protein_coding_geneCaenorhabditis elegans

abnormal cell LINeage 3

Synonyms: CELE_F36H1.4, F36H1.4, let-94, sli-4

lin-3 at a glance

Evidence and relationships from published C. elegans research

62Relationships
123Claims

Knowledge Graph Relationships

Outgoing (23)

lin-3expressed inWBbt:0006748Anatomy
7 claims7 supportssupported
lin-3regulationlet-23Gene
5 claims5 supportssupported
lin-3expressed inWBbt:0004522Anatomy
4 claims4 supportssupported
lin-3regulationlin-3Gene
3 claims3 supportssupported
lin-3expressed inWBbt:0004017Anatomy
3 claims3 supportssupported
lin-3regulationlet-60Gene
2 claims2 supportssupported
lin-3positively regulatesWBbt:0004017Anatomy
2 claims2 supportssupported
lin-3positively regulateslin-3Gene
2 claims1 supports1 uncertainsupported
lin-3regulationWBGene00000903Protein
1 claims1 supportssupported
lin-3regulationWBGene00000898Protein
1 claims1 supportssupported
lin-3positively regulateslet-23Gene
1 claims1 supportssupported
lin-3positively regulatesWBbt:0006748Anatomy
1 claims1 supportssupported
lin-3expressed inWBbt:0005784Anatomy
1 claims1 supportssupported
lin-3expressed inWBbt:0005175Anatomy
1 claims1 supportssupported
lin-3regulatesWBbt:0006748Anatomy
1 claims1 supportssupported

Incoming (39)

lin-3regulationlin-3Gene
3 claims3 supports
WBbt:0006748expressed inlin-3Anatomy
3 claims3 supports
WBbt:0004017expressed inlin-3Anatomy
3 claims3 supports
vulvalesscauses phenotypelin-3Phenotype
3 claims3 supports
lin-2regulationlin-3Gene
2 claims2 supports
lin-3positively regulateslin-3Gene
2 claims1 supports
molt defectregulateslin-3Phenotype
2 claims2 supports
multivulvacauses phenotypelin-3Phenotype
2 claims2 supports
WBGene00002992regulationlin-3Protein
1 claims1 supports
pept-1regulationlin-3Gene
1 claims1 supports

Evidence (123 claims)

Supportsexpressed_in
lin-3→lineage

We have shown that lin-3 is also expressed in the 1 degrees vulval lineage after vulval induction and that the 1 degrees vulva is necessary to induce the uv1 uterine cell fate.

Reciprocal EGF signaling back to the uterus from the induced C. elegans vulva coordinates morphogenesis of epithelia.PMID:10074449
Supportsregulation100% conf.
DAF-7→DBL-1

In neurons, LET-23 functioned at the upstream of DAF-7/DBL-1, ligands of TGF-β signals, to mediate PS-A NPs' transgenerational toxicity.

Amino-modified nanoplastics at predicted environmental concentrations cause transgenerational toxicity through activating germline EGF signal in Caenorhabditis elegans.PMID:39004367
Supportsexpressed_in
LIN-3→tissue

Correlation of mutant phenotypes and their molecular lesions, as well as sequence comparison between two species, reveal that the EGF motif and the N-terminal portion of the cytoplasmic domain are important for the functions of LIN-3 in all tissues, while the C-terminal portion of the cytoplasmic domain is involved in the tissue-specific functions of lin-3.

Structural requirements for the tissue-specific and tissue-general functions of the Caenorhabditis elegans epidermal growth factor LIN-3.PMID:10545457
Supportsregulation100% conf.
lin-29→lag-2

In the uterus, lin-29 functioned upstream of lin-12 in the induction of pi cells and was necessary to maintain expression in the AC of lag-2, which encodes a ligand for LIN-12.

The Caenorhabditis elegans heterochronic gene lin-29 coordinates the vulval-uterine-epidermal connections.PMID:11114514
Supportsexpressed_in
lin-3→vulva

We identify a class A synMuv mutation in the promoter of the lin-3 EGF gene, establishing that lin-3 is the key biological target of the class A synMuv genes in vulval development and that the repressive activities of the class A and B synMuv pathways are integrated at the level of lin-3 expression.

The Caenorhabditis elegans synthetic multivulva genes prevent ras pathway activation by tightly repressing global ectopic expression of lin-3 EGF.PMID:22242000
Supportsregulation100% conf.
SISS-1→LIN-3

The ectodomain of SISS-1 , but not of LIN-3 , also contains an Immunoglobulin-like (Ig) domain, putting it into a class of Ig-EGFs that includes Drosophila Vein and certain vertebrate Neuregulins.

The Immunoglobulin Domain of SISS-1/EGF is Required for its Function.PMID:41031131
Supportsexpressed_in
MIG-15→cell

Moreover, endogenous MIG-15 is required for expression of a fluorescent biomarker of 3˚ cell fate, is expressed in VPCs, and functions cell autonomously in VPCs.

RAP-2 and CNH-MAP4 Kinase MIG-15 confer resistance in bystander epithelium to cell-fate transformation by excess Ras or Notch activity.PMID:39739816
Supportsregulation100% conf.
LET-23→DAF-16

LET-23 acted at the upstream DAF-16/FOXO within the intestine in response to PS-A NPs' transgenerational toxicity.

Amino-modified nanoplastics at predicted environmental concentrations cause transgenerational toxicity through activating germline EGF signal in Caenorhabditis elegans.PMID:39004367
Supportsexpressed_in
lin-3→vulval precursor

The C. elegans lin-3 gene encodes an epidermal growth factor family (EGF) growth factor. lin-3 is expressed in the gonadal anchor cell and acts through LET-23 (transmembrane protein tyrosine kinase and ortholog of EGF receptor) to signal the vulval precursor cells to generate vulval tissue. lin-3 is expressed in the vulval cells later, and recent evidence raises the possibility that lin-3 acts in the vulval cells as a relay signal during vulval induction.

Visualization of C. elegans transgenic arrays by GFP.PMID:16759392
Supportsregulation100% conf.
lin-3→LET-23

The C. elegans lin-3 gene encodes an epidermal growth factor family (EGF) growth factor. lin-3 is expressed in the gonadal anchor cell and acts through LET-23 (transmembrane protein tyrosine kinase and ortholog of EGF receptor) to signal the vulval precursor cells to generate vulval tissue. lin-3 is expressed in the vulval cells later, and recent evidence raises the possibility that lin-3 acts in the vulval cells as a relay signal during vulval induction.

Visualization of C. elegans transgenic arrays by GFP.PMID:16759392
Supportsregulation100% conf.
lin-15→let-23

We find that lin-15 acts upstream of let-23 and in parallel to the inductive signal.

The lin-15 locus encodes two negative regulators of Caenorhabditis elegans vulval development.PMID:8054684
Supportsexpressed_in
lin-3→vulva

Expression of lin-3 in the anchor cell stimulates vulval induction; lin-3 may encode the vulval inducing signal.

The gene lin-3 encodes an inductive signal for vulval development in C. elegans.PMID:1641037
Supportsexpressed_in
lin-3→germline

These results suggest hypotheses for the mechanistic basis of the functional redundancy between the tumor-suppressor-like class A and B synMuv genes: the class A synMuv genes either directly or indirectly specifically repress ectopic lin-3 expression; while the class B synMuv genes might function similarly, but alternatively might act to repress lin-3 as a consequence of their role in preventing cells from adopting a germline-like fate.

The Caenorhabditis elegans synthetic multivulva genes prevent ras pathway activation by tightly repressing global ectopic expression of lin-3 EGF.PMID:22242000
Supportsregulation100% conf.
TOR→S6K

These results suggest a cross-talk between nutrient deprivation, TOR-S6K and EGF-Ras-MAPK signaling during C. elegans vulval induction.

Physiological Starvation Promotes Caenorhabditis elegans Vulval Induction.PMID:30037804
Supportsexpressed_in
lin-3→germline

Using FISH with single mRNA molecule resolution, we find that lin-3 EGF expression is tightly restricted to only a few tissues in wild-type animals, including the germline.

The Caenorhabditis elegans synthetic multivulva genes prevent ras pathway activation by tightly repressing global ectopic expression of lin-3 EGF.PMID:22242000
Supportsregulation100% conf.
IGEG-2→LET-23

To determine if IGEG-2 is a functional EGFR ligand, we examined whether it can activate known LET-23-dependent processes.

IGEG-2 is a C. elegans EGFR ligand.PMID:41040971
Supportsregulation100% conf.
lin-15→let-23

We demonstrate that lin-15 acts in spicule development as it does in vulval induction, as a negative regulator of let-23 receptor activity.

The lin-3/let-23 pathway mediates inductive signalling during male spicule development in Caenorhabditis elegans.PMID:7607066
Supportsregulation100% conf.
lin-3→DAF-7

Using the strong starvation suppression of the Vulvaless phenotype of lin-3/egf reduction-of-function mutations as an experimental paradigm, we first tested for a possible involvement of the sensory system in relaying starvation signals to affect vulval induction: mutation of various sensory inputs, DAF-2/Insulin or DAF-7/TGF-β signaling did not abolish lin-3(rf) starvation suppression.

Physiological Starvation Promotes Caenorhabditis elegans Vulval Induction.PMID:30037804
Supportsregulation100% conf.
lin-3→lin-15

However, this signal is apparently integrated into the lin-3/let-23 pathway at some step after lin-45 raf and is thus functionally distinct from lin-15.

The lin-3/let-23 pathway mediates inductive signalling during male spicule development in Caenorhabditis elegans.PMID:7607066
Supportsregulation100% conf.
LIN-3→let-23

We show that LIN-3 is an inductive signal sufficient to promote the P12 fate, and the conserved EGF signaling pathway is utilized for P12 fate specification; egl-5 is a downstream target of the lin-3/let-23 pathway in specifying P12 fate; and LIN-44 and LIN-17 act synergistically with lin-3 in the specification of the P12 fate.

Interactions of EGF, Wnt and HOM-C genes specify the P12 neuroectoblast fate in C. elegans.PMID:9584132

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