Evidence Engine
Gene

daf-4

WBGene00000900protein_coding_geneCaenorhabditis elegans

abnormal DAuer Formation 4

Synonyms: C05D2.1, CELE_C05D2.1

daf-4 at a glance

Evidence and relationships from published C. elegans research

37Relationships
37Claims

Knowledge Graph Relationships

Outgoing (16)

daf-4regulationdaf-8Gene
1 claims1 supportssupported
daf-4regulationdaf-1Gene
1 claims1 supportssupported
daf-4regulationWBGene00000900Protein
1 claims1 supportssupported
daf-4regulationWBGene00000903Protein
1 claims1 supportssupported
daf-4regulationsma-3Gene
1 claims1 supportssupported
daf-4regulationdaf-4Gene
1 claims1 supportssupported
daf-4positively regulatesdaf-1Gene
1 claims1 supportssupported
daf-4expressed inWBbt:0007850Anatomy
1 claims1 supportssupported
daf-4expressed inWBbt:0005735Anatomy
1 claims1 supportssupported
daf-4expressed inWBbt:0004017Anatomy
1 claims1 supportssupported
daf-4regulatesWBls:0000023LifeStage
1 claims1 supportssupported
daf-4causes phenotypenematode phenotypePhenotype
1 claims1 supportssupported
daf-4bindingsma-4Gene
1 claims1 supportssupported
daf-4bindingdaf-4Gene
1 claims1 supportssupported
daf-4negatively regulatessup-7Gene
1 claims1 supportssupported

Incoming (21)

dbl-1regulationdaf-4Gene
3 claims3 supports
daf-1regulationdaf-4Gene
2 claims2 supports
sma-6regulationdaf-4Gene
2 claims2 supports
WBbt:0004017expressed duringdaf-4Anatomy
2 claims2 supports
unc-52regulationdaf-4Gene
1 claims1 supports
daf-2regulationdaf-4Gene
1 claims1 supports
daf-3regulationdaf-4Gene
1 claims1 supports
WBGene00000903regulationdaf-4Protein
1 claims1 supports
age-1regulationdaf-4Gene
1 claims1 supports
klf-1regulationdaf-4Gene
1 claims1 supports

Evidence (37 claims)

Supportsregulation100% conf.
sma-11→sma-20

Two genes, sma-11 and sma-20, also influence regulation of the developmentally arrested dauer larval stage, suggesting a role in a second characterized TGFbeta pathway in C. elegans.

Genetic screen for small body size mutants in C. elegans reveals many TGFbeta pathway components.PMID:12717735
Supportsexpressed_in
daf-4→nervous system

The activity may be an evolutionary remnant, owing to daf-1's origin near the type I/type II divergence, or it may be an innovation that evolved in nematodes. daf-1 and daf-4 promoters both mediated expression of green fluorescent protein in the nervous system, indicating that a DAF-1/DAF-4 receptor complex may activate a neuronal signaling pathway.

A Caenorhabditis elegans type I TGF beta receptor can function in the absence of type II kinase to promote larval development.PMID:10887089
Supportscauses_phenotype
sma-4→abnormal

Mutations in daf-4, sma-2, sma-3, and sma-4, which disrupt TGFbeta-like signaling, result in aberrant migrations and morphologically abnormal spicules. daf-4, and hence the TGFbeta-like signal, is required prior to or during cell migrations.

TGFbeta-like signaling and spicule development in Caenorhabditis elegans.PMID:10419688
Supportsregulation100% conf.
sma-6→sma-4

Mutations in sma-6 generate the reduced body size (Sma) and abnormal mail tail (Mab) phenotypes identical to those observed in daf-4 and sma-2, sma-3, sma-4 mutants (C. elegans Smads), indicating that they function in a common signaling pathway.

Specificity of TGFbeta signaling is conferred by distinct type I receptors and their associated SMAD proteins in Caenorhabditis elegans.PMID:9847239
Supportsregulation100% conf.
cmk-1→unc-30

Target prediction and pathway enrichment analyses showed daf-4, daf-1, fos-1, cmk-1, and unc-30 to be potential effectors of nicotine addiction.

Nicotine exposure and transgenerational impact: a prospective study on small regulatory microRNAs.PMID:25515333
Supportsregulation100% conf.
TSP-14→TSP-14

As TSP-12 and TSP-14 are conserved in mammals, our findings suggest that the mammalian TSP-12 and TSP-14 homologs may also function in regulating transmembrane protein recycling and BMP signaling.

Tetraspanins TSP-12 and TSP-14 function redundantly to regulate the trafficking of the type II BMP receptor in Caenorhabditis elegans.PMID:31988138
Supportsregulation100% conf.
SER-5→DAF-2

In intestine, SER-5, DAF-2, EGL-15, and GON-2 mediated "sword effect" and FSHR-1 mediated "shield effect" in response to the primordial response of the 6-PPDQ-induced reproductive toxicity.

Identification of cell-surface receptors associated with 6-PPD quinone-induced reproductive toxicity in Caenorhabditis elegans after long-term and low-dose exposure: A primordial response including sword effect and shield effect.PMID:40048782
Supportsregulation100% conf.
DCAR-1→DAF-4

The epidermal cell-surface receptors (DCAR-1 and DAF-4) mainly mediated the primordial response by enhancing epidermal innate immune response or reproductive aging, and the intestinal cell-surface receptors (SER-5, FSHR-1, GON-2, DAF-2, and EGL-15) mainly mediated the primordial response by inducing oxidative stress or intestinal innate immune response.

Identification of cell-surface receptors associated with 6-PPD quinone-induced reproductive toxicity in Caenorhabditis elegans after long-term and low-dose exposure: A primordial response including sword effect and shield effect.PMID:40048782
Supportsexpressed_in
DAF-4→cell

We describe a novel role of this pathway in maintaining receptor gene expression in the adult and show that the DAF-4 type II TGF-beta receptor functions cell-autonomously to modulate chemoreceptor expression.

The DAF-7 TGF-beta signaling pathway regulates chemosensory receptor gene expression in C. elegans.PMID:12464635
Supportsregulation100% conf.
DAF-4→MIG-14

Our study demonstrates the intersection between the autophagy pathway and the endocytic pathway, providing insights into the pathogenesis of amyotrophic lateral sclerosis (ALS) and Vici syndrome.Abbreviations: ALM: anterior lateral microtubule; ATG: autophagy related; AVM: anterior ventral microtubule; CORVET: class C core vacuole/endosome tethering; DAF-4: abnormal dauer formation 4; DIC: differential interference contrast; EPG: ectopic PGL granules; EPG-5: ectopic P granules 5; GAP: GTPase activating protein; GFP: green fluorescent protein; HOPS: homotypic fusion and vacuole protein sorting; H.s.IL2RA/hTAC: human interleukin 2 receptor subunit alpha; H.s.TFR/hTfR: human transferrin receptor; L1/L4: the first/fourth larval; mCh: mCherry; MIG-14: abnormal cell migration 14; PLM: posterior lateral microtubule; PVM: posterior ventral microtubule; RAB: ras-related protein; RFP: red fluorescent protein; RME-1: receptor mediated endocytosis 1; SMA-6: small 6; SNARE: soluble N-ethylmaleimide-sensitive factor attachment protein receptor; SNX: sorting nexin; TBC-2: TBC1 (Tre-2/Bub2/Cdc16) domain family 2; TGFB/TGF-β: transforming growth factor beta; TGN: trans-Golgi network; VPS: related to yeast vacuolar protein sorting factor; WT: wild type.

EPG-5 regulates TGFB/TGF-β and WNT signalling by modulating retrograde endocytic trafficking.PMID:40152605
Supportsregulation100% conf.
DAF-1→DAF-8

They also raise the possibility of an unexpected function for DAF-1 and DAF-8 that is independent of their normal upstream activator, DAF-7.

C. elegans STAT cooperates with DAF-7/TGF-beta signaling to repress dauer formation.PMID:16401427
Supportsregulation100% conf.
daf-1→daf-1

The activity may be an evolutionary remnant, owing to daf-1's origin near the type I/type II divergence, or it may be an innovation that evolved in nematodes. daf-1 and daf-4 promoters both mediated expression of green fluorescent protein in the nervous system, indicating that a DAF-1/DAF-4 receptor complex may activate a neuronal signaling pathway.

A Caenorhabditis elegans type I TGF beta receptor can function in the absence of type II kinase to promote larval development.PMID:10887089
Supportsregulation100% conf.
lon→sma-4

We have cloned and characterized lon-1, a gene with homology to the cysteine-rich secretory protein (CRISP) family of proteins. lon-1 regulates body size morphogenesis, but does not affect male tail development. lon-1 is expressed in hypodermal tissues, which is the focus of body size determination, similar to sma-2, sma-4, and sma-6.

lon-1 regulates Caenorhabditis elegans body size downstream of the dbl-1 TGF beta signaling pathway.PMID:12051826
Supportsbinding100% conf.
lon→lon

Using genetic methods, we show that lon-1 lies downstream of the Sma/Mab signaling cascade and demonstrate that lon-1 mRNA levels are up-regulated in sma-6-null mutant animals.

lon-1 regulates Caenorhabditis elegans body size downstream of the dbl-1 TGF beta signaling pathway.PMID:12051826
Supportsexpressed_in
daf-4→cell

Mutations in daf-4, sma-2, sma-3, and sma-4, which disrupt TGFbeta-like signaling, result in aberrant migrations and morphologically abnormal spicules. daf-4, and hence the TGFbeta-like signal, is required prior to or during cell migrations.

TGFbeta-like signaling and spicule development in Caenorhabditis elegans.PMID:10419688
Supportsregulation100% conf.
MIG-14→SNX-1

In epg-5 mutants, SMA-6 and MIG-14 are trapped within hybrid endosomal structures, which colocalize with SNX-1- and SNX-3-labeled vesicles, respectively.

EPG-5 regulates TGFB/TGF-β and WNT signalling by modulating retrograde endocytic trafficking.PMID:40152605
Supportsregulation100% conf.
NEKL-3→nekl-3

Thus, NIMA family kinases carry out multiple functions during endocytosis in both worms and humans, consistent with our previous observation that human NEKL-3 orthologs can rescue molting and trafficking defects in C. elegans nekl-3 mutants.

Conserved NIMA kinases regulate multiple steps of endocytic trafficking.PMID:37099601
Supportsregulation100% conf.
sma-16→sma-20

Four of these 11 genes, sma-9, sma-14, sma-16, and sma-20 affect male tail morphogenesis as well as body size.

Genetic screen for small body size mutants in C. elegans reveals many TGFbeta pathway components.PMID:12717735
Supportsexpressed_in
RME-1→male

Our study demonstrates the intersection between the autophagy pathway and the endocytic pathway, providing insights into the pathogenesis of amyotrophic lateral sclerosis (ALS) and Vici syndrome.Abbreviations: ALM: anterior lateral microtubule; ATG: autophagy related; AVM: anterior ventral microtubule; CORVET: class C core vacuole/endosome tethering; DAF-4: abnormal dauer formation 4; DIC: differential interference contrast; EPG: ectopic PGL granules; EPG-5: ectopic P granules 5; GAP: GTPase activating protein; GFP: green fluorescent protein; HOPS: homotypic fusion and vacuole protein sorting; H.s.IL2RA/hTAC: human interleukin 2 receptor subunit alpha; H.s.TFR/hTfR: human transferrin receptor; L1/L4: the first/fourth larval; mCh: mCherry; MIG-14: abnormal cell migration 14; PLM: posterior lateral microtubule; PVM: posterior ventral microtubule; RAB: ras-related protein; RFP: red fluorescent protein; RME-1: receptor mediated endocytosis 1; SMA-6: small 6; SNARE: soluble N-ethylmaleimide-sensitive factor attachment protein receptor; SNX: sorting nexin; TBC-2: TBC1 (Tre-2/Bub2/Cdc16) domain family 2; TGFB/TGF-β: transforming growth factor beta; TGN: trans-Golgi network; VPS: related to yeast vacuolar protein sorting factor; WT: wild type.

EPG-5 regulates TGFB/TGF-β and WNT signalling by modulating retrograde endocytic trafficking.PMID:40152605
Supportsexpressed_in
SMA-6→cell

In addition, defects were observed in the uptake of clathrin-dependent (SMA-6/Type I BMP receptor) and independent cargoes (DAF-4/Type II BMP receptor) from the basolateral surface of epidermal cells after NEKL-2 or NEKL-3 depletion.

Conserved NIMA kinases regulate multiple steps of endocytic trafficking.PMID:37099601

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